| pick | mls_team | player | position | affiliation |
| 15 | san jose earthquakes | shea salinas | m | furman carolina dynamo |
| 16 | new york red bulls | eric brunner | d | ohio state michigan bucks |
| 17 | real salt lake | alex nimo | f | generation adidas |
| 18 | new england revolution | michael videira | m | duke cary railhawks u23 's |
| 19 | fc dallas | eric avila | m | uc santa barbara ventura county fusion |
| 20 | columbus crew | george josten | m / f | gonzaga michigan bucks |
| 21 | los angeles galaxy | ely allen | f / m | washington |
| 22 | columbus crew | ricardo pierre - louis | f | lee university cape cod crusaders |
| 23 | kansas city wizards | yomby william | d | old dominion hampton roads piranhas |
| 24 | dc united | andrew jacobson | m | california |
| 25 | kansas city wizards | jonathan leathers | d | furman atlanta silverbacks u23 's |
| 26 | chicago fire | peter lowry | m / f | santa clara san jose frogs |
| 27 | new england revolution | joe germanese | m | duke cary railhawks u23 's |
| 28 | toronto fc | brian edwards | gk | wake forest |